Cleans up organ processing

code/modules/mob/living/carbon/human/life.dm

@@ -316,9 +316,6 @@
 		if(istype(loc, /obj/machinery/atmospherics/unary/cryo_cell)) return
 		if(species && (species.flags & NO_BREATHE || species.flags & IS_SYNTHETIC)) return
 
-		var/datum/organ/internal/lungs/L = internal_organs["lungs"]
-		L.process()
-
 		var/datum/gas_mixture/environment = loc.return_air()
 		var/datum/gas_mixture/breath
 		
@@ -1077,12 +1074,6 @@
 
 		if(!(species.flags & IS_SYNTHETIC)) handle_trace_chems()
 
-		var/datum/organ/internal/liver/liver = internal_organs["liver"]
-		liver.process()
-
-		var/datum/organ/internal/eyes/eyes = internal_organs["eyes"]
-		eyes.process()
-
 		updatehealth()
 
 		return //TODO: DEFERRED

code/modules/organs/organ.dm

@@ -65,19 +65,10 @@
 		else
 			E.process()
 			number_wounds += E.number_wounds
-			//Robotic limb malfunctions
-			var/malfunction = 0
-			if (E.status & ORGAN_ROBOT && prob(E.brute_dam + E.burn_dam))
-				malfunction = 1
-
-			//Broken limbs hurt too
-			var/broken = 0
-			if(E.status & ORGAN_BROKEN && !(E.status & ORGAN_SPLINTED) )
-				broken = 1
 
 			if (!lying && world.time - l_move_time < 15)
 			//Moving around with fractured ribs won't do you any good
-				if (broken && E.internal_organs && prob(15))
+				if (E.is_broken() && E.internal_organs && prob(15))
 					var/datum/organ/internal/I = pick(E.internal_organs)
 					custom_pain("You feel broken bones moving in your [E.display_name]!", 1)
 					I.take_damage(rand(3,5))
@@ -88,36 +79,13 @@
 						if (W.infection_check())
 							W.germ_level += 1
 
-			//Special effects for limbs.
-			if(E.name in list("l_hand","l_arm","r_hand","r_arm"))
-				var/obj/item/c_hand		//Getting what's in this hand
-				var/hand
-				if(E.name == "l_hand" || E.name == "l_arm")
-					c_hand = l_hand
-					hand = "left hand"
-				if(E.name == "r_hand" || E.name == "r_arm")
-					c_hand = r_hand
-					hand = "right hand"
-				if (c_hand)
-
-					if(broken)
-						u_equip(c_hand)
-						var/emote_scream = pick("screams in pain and", "let's out a sharp hiss and", "cries out and")
-						emote("me", 1, "[(species && species.flags & NO_PAIN) ? "" : emote_scream ] drops what they were holding in their [hand]!")
-					if(malfunction)
-						u_equip(c_hand)
-						emote("me", 1, "drops what they were holding, their [hand] malfunctioning!")
-						var/datum/effect/effect/system/spark_spread/spark_system = new /datum/effect/effect/system/spark_spread()
-						spark_system.set_up(5, 0, src)
-						spark_system.attach(src)
-						spark_system.start()
-						spawn(10)
-							del(spark_system)
-
-			else if(E.name in list("l_leg","l_foot","r_leg","r_foot") && !lying)
+			if(E.name in list("l_leg","l_foot","r_leg","r_foot") && !lying)
 				if (!E.is_usable() || malfunction || (broken && !(E.status & ORGAN_SPLINTED)))
 					leg_tally--			// let it fail even if just foot&leg
 
+	for(var/datum/organ/internal/I in internal_organs)
+		I.process()
+	
 	// standing is poor
 	if(leg_tally <= 0 && !paralysis && !(lying || resting) && prob(5))
 		if(species && species.flags & NO_PAIN)

code/modules/organs/organ_external.dm

@@ -328,6 +328,7 @@ This function completely restores a damaged organ to perfect condition.
 	if(!(status & ORGAN_BROKEN))
 		perma_injury = 0
 
+	//Infections
 	update_germs()
 	return
 
@@ -352,23 +353,22 @@ This function completely restores a damaged organ to perfect condition.
 				germ_level++
 
 		var/antibiotics = owner.reagents.get_reagent_amount("spaceacillin")
-		if (antibiotics > 5)
+		if (germ_level > 0 && antibiotics > 5)
 			if (prob(4*antibiotics)) germ_level--
 		
 		if(germ_level > INFECTION_LEVEL_ONE)
 			//having an infection raises your body temperature
 			var/temperature_increase = (owner.species.heat_level_1 - owner.species.body_temperature - 1)* min(germ_level/INFECTION_LEVEL_TWO, 1)
-			owner.bodytemperature += temperature_increase
+			if (owner.bodytemperature < temperature_increase)
+				owner.bodytemperature++
 			
 			if(prob(round(germ_level/10)))	//aiming for a light infection to become serious after 40 minutes, standing still
 				germ_level += 1
 				owner.adjustToxLoss(1)
-			
+		
 		if(germ_level > INFECTION_LEVEL_TWO && antibiotics < 30)	//overdosing is necessary to stop severe infections
 			germ_level++
 			owner.adjustToxLoss(1)
-
-
 /*
 		if(germ_level > GANGREN_LEVEL_TERMINAL)
 			if (!(status & ORGAN_DEAD))
@@ -713,6 +713,36 @@ This function completely restores a damaged organ to perfect condition.
 /datum/organ/external/proc/is_usable()
 	return !(status & (ORGAN_DESTROYED|ORGAN_MUTATED|ORGAN_DEAD))
 
+/datum/organ/external/proc/is_broken()
+	return ((status & ORGAN_BROKEN) && !(status & ORGAN_SPLINTED))
+
+/datum/organ/external/proc/is_malfunctioning()
+	return ((status & ORGAN_ROBOT) && prob(E.brute_dam + E.burn_dam))
+
+//for arms and hands
+/datum/organ/external/proc/process_grasp(var/obj/item/c_hand, var/hand_name)
+	if (!c_hand)
+		return
+	
+	if(is_broken())
+		owner.u_equip(c_hand)
+		var/emote_scream = pick("screams in pain and", "lets out a sharp cry and", "cries out and")
+		owner.emote("me", 1, "[(species && species.flags & NO_PAIN) ? "" : emote_scream ] drops what they were holding in their [hand_name]!")
+	if(is_malfunctioning())
+		owner.u_equip(c_hand)
+		owner.emote("me", 1, "drops what they were holding, their [hand_name] malfunctioning!")
+		var/datum/effect/effect/system/spark_spread/spark_system = new /datum/effect/effect/system/spark_spread()
+		spark_system.set_up(5, 0, src)
+		spark_system.attach(src)
+		spark_system.start()
+		spawn(10)
+			del(spark_system)
+
+//legs
+//returns 1 if this organ can support standing
+/datum/organ/external/proc/can_support_standing()
+	if (!E.is_usable() || malfunction || (broken && !(E.status & ORGAN_SPLINTED)))
+
 /****************************************************
 			   ORGAN DEFINES
 ****************************************************/
@@ -741,6 +771,10 @@ This function completely restores a damaged organ to perfect condition.
 	max_damage = 50
 	min_broken_damage = 20
 	body_part = ARM_LEFT
+	
+	process()
+		..()
+		process_grasp(owner.l_hand, "left hand")
 
 /datum/organ/external/l_leg
 	name = "l_leg"
@@ -758,6 +792,10 @@ This function completely restores a damaged organ to perfect condition.
 	max_damage = 50
 	min_broken_damage = 20
 	body_part = ARM_RIGHT
+	
+	process()
+		..()
+		process_grasp(owner.r_hand, "right hand")
 
 /datum/organ/external/r_leg
 	name = "r_leg"
@@ -793,6 +831,10 @@ This function completely restores a damaged organ to perfect condition.
 	max_damage = 30
 	min_broken_damage = 15
 	body_part = HAND_RIGHT
+	
+	process()
+		..()
+		process_grasp(owner.r_hand, "right hand")
 
 /datum/organ/external/l_hand
 	name = "l_hand"
@@ -801,6 +843,10 @@ This function completely restores a damaged organ to perfect condition.
 	max_damage = 30
 	min_broken_damage = 15
 	body_part = HAND_LEFT
+	
+	process()
+		..()
+		process_grasp(owner.l_hand, "left hand")
 
 /datum/organ/external/head
 	name = "head"

code/modules/organs/organ_internal.dm

@@ -10,6 +10,7 @@
 	var/min_broken_damage = 30
 	var/parent_organ = "chest"
 	var/robotic = 0 //For being a robot
+	var/germ_level = 0
 
 /datum/organ/internal/proc/rejuvenate()
 	damage=0
@@ -40,7 +41,6 @@
 	if (!silent)
 		owner.custom_pain("Something inside your [parent.display_name] hurts a lot.", 1)
 
-
 /datum/organ/internal/proc/emp_act(severity)
 	switch(robotic)
 		if(0)
@@ -96,7 +96,7 @@
 				owner.drip(10)
 			if(prob(4))
 				spawn owner.emote("me", 1, "gasps for air!")
-				owner.losebreath += 5
+				owner.losebreath += 15
 
 /datum/organ/internal/liver
 	name = "liver"