Fixes #5532 and increases the time required for organs to become infected from wounds

Also removes the now unnecessary get_cure_threshold() proc, caps the
rate at which an organ can receive germs from wounds, and makes germs
spread from external to internal organs happen one organ at a time
instead of all at once.

code/modules/organs/organ.dm

@@ -18,16 +18,10 @@
 	return icon('icons/mob/human.dmi',"blank")
 
 //Germs
-/datum/organ/proc/get_cure_threshold()
-	//before reaching level three, the amount of spaceacillin required to cure infections scales between 5 and 30 units
-	//var/germ_scale = max((germ_level - INFECTION_LEVEL_ONE)/(INFECTION_LEVEL_THREE - INFECTION_LEVEL_ONE), 0)
-	//return min(5 + germ_scale*25, 30)
-	return 5	//Based on Hubble's suggestion
-
 /datum/organ/proc/handle_antibiotics()
 	var/antibiotics = owner.reagents.get_reagent_amount("spaceacillin")
 	
-	if (antibiotics <= get_cure_threshold())
+	if (antibiotics < 5)
 		return
 		
 	if (germ_level < INFECTION_LEVEL_ONE)

code/modules/organs/organ_external.dm

@@ -377,13 +377,18 @@ Note that amputating the affected organ does in fact remove the infection from t
 		if (owner.germ_level > W.germ_level && W.infection_check())
 			W.germ_level++
 
+	if (antibiotics < 5)
+		for(var/datum/wound/W in wounds)
 			//Infected wounds raise the organ's germ level
-		if (W.germ_level > germ_level && antibiotics < 5)	//Badly infected wounds raise internal germ levels
+			if (W.germ_level > germ_level)
 				germ_level++
+				break	//limit increase to a maximum of one per second
 
 /datum/organ/external/proc/handle_germ_effects()
 	var/antibiotics = owner.reagents.get_reagent_amount("spaceacillin")
-	var/cure_threshold = get_cure_threshold()
+	
+	if (germ_level < INFECTION_LEVEL_ONE & prob(60))	//this could be an else clause, but it looks cleaner this way
+		germ_level--	//since germ_level increases at a rate of 1 per second with dirty wounds, prob(60) should give us about 5 minutes before level one.
 	
 	if(germ_level >= INFECTION_LEVEL_ONE)
 		//having an infection raises your body temperature
@@ -393,17 +398,29 @@ Note that amputating the affected organ does in fact remove the infection from t
 			owner.bodytemperature++
 
 		if(prob(round(germ_level/10)))
-			if (antibiotics < cure_threshold)
+			if (antibiotics < 5)
 				germ_level++
 			
-			if (prob(3))	//adjust this to tweak how fast people take toxin damage from infections
+			if (prob(5))	//adjust this to tweak how fast people take toxin damage from infections
 				owner.adjustToxLoss(1)
 
-	if(germ_level >= INFECTION_LEVEL_TWO && antibiotics < cure_threshold)
+	if(germ_level >= INFECTION_LEVEL_TWO && antibiotics < 5)
 		//spread the infection
+		var/datum/organ/internal/target_organ	//make internal organs become infected one at a time instead of all at once
+		for (var/datum/organ/internal/I in internal_organs)
+			if (I.germ_level > 0 && I.germ_level < min(germ_level, INFECTION_LEVEL_TWO))	//once the organ reaches whatever we can give it, or level two, switch to a different one
+				if (!target_organ || I.germ_level > target_organ.germ_level)	//choose the organ with the highest germ_level
+					target_organ = I
+		
+		if (!target_organ)
+			//figure out which organs we can spread germs to and pick one at random
+			var/list/candidate_organs = list()
 			for (var/datum/organ/internal/I in internal_organs)
 				if (I.germ_level < germ_level)
-				I.germ_level++
+					candidate_organs += I
+			target_organ = pick(candidate_organs)
+		
+		target_organ.germ_level++
 
 		if (children)	//To child organs
 			for (var/datum/organ/external/child in children)
@@ -470,8 +487,8 @@ Note that amputating the affected organ does in fact remove the infection from t
 
 		// Salving also helps against infection
 		if(W.germ_level > 0 && W.salved && prob(2))
-			W.germ_level = 0
 			W.disinfected = 1
+			W.germ_level = 0
 
 	// sync the organ's damage with its wounds
 	src.update_damages()

code/modules/organs/organ_internal.dm

@@ -32,7 +32,6 @@
 	src.owner = H
 
 /datum/organ/internal/process()
-
 	//Process infections
 	if (!germ_level)
 		return
@@ -48,23 +47,23 @@
 		//** Handle the effects of infections
 		var/antibiotics = owner.reagents.get_reagent_amount("spaceacillin")
 		
+		if (germ_level < INFECTION_LEVEL_ONE/2 && prob(60))
+			germ_level--
+		
 		if (germ_level >= INFECTION_LEVEL_ONE/2)
 			//aiming for germ level to go from ambient to INFECTION_LEVEL_TWO in an average of 15 minutes
 			if(antibiotics < 5 && prob(round(germ_level/6)))
 				germ_level++
-			if(prob(1))
-				take_damage(1,silent=prob(60))
 
 		if (germ_level >= INFECTION_LEVEL_TWO)
 			var/datum/organ/external/parent = owner.get_organ(parent_organ)
 			//spread germs
-			if (antibiotics < get_cure_threshold() && parent.germ_level < germ_level && ( parent.germ_level < INFECTION_LEVEL_ONE*2 || prob(30) ))
+			if (antibiotics < 5 && parent.germ_level < germ_level && ( parent.germ_level < INFECTION_LEVEL_ONE*2 || prob(30) ))
 				parent.germ_level++
 			
 			if (prob(3))	//about once every 30 seconds
 				take_damage(1,silent=prob(30))
 
-
 /datum/organ/internal/proc/take_damage(amount, var/silent=0)
 	if(src.robotic == 2)
 		src.damage += (amount * 0.8)
@@ -124,6 +123,11 @@
 	parent_organ = "chest"
 
 	process()
+		..()
+		if (germ_level > INFECTION_LEVEL_ONE)
+			if(prob(1))
+				owner.emote("cough")		//respitory tract infection
+		
 		if(is_bruised())
 			if(prob(2))
 				spawn owner.emote("me", 1, "coughs up blood!")
@@ -138,6 +142,14 @@
 	var/process_accuracy = 10
 
 	process()
+		..()
+		if (germ_level > INFECTION_LEVEL_ONE)
+			if(prob(1))
+				owner << "\red Your skin itches."
+		if (germ_level > INFECTION_LEVEL_TWO)
+			if(prob(1))
+				spawn owner.vomit()
+		
 		if(owner.life_tick % process_accuracy == 0)
 			if(src.damage < 0)
 				src.damage = 0
@@ -180,6 +192,7 @@
 	parent_organ = "head"
 
 	process() //Eye damage replaces the old eye_stat var.
+		..()
 		if(is_bruised())
 			owner.eye_blurry = 20
 		if(is_broken())

code/setup.dm

@@ -774,7 +774,7 @@ var/list/RESTRICTED_CAMERA_NETWORKS = list( //Those networks can only be accesse
 
 #define INFECTION_LEVEL_ONE		100
 #define INFECTION_LEVEL_TWO		500
-#define INFECTION_LEVEL_THREE	1500
+#define INFECTION_LEVEL_THREE	1000
 
 
 /*