Added basic germ code.

This will only trigger in surgery for now - That is when you cut someone open in surgery, you'd better wash your hands before, or otherwise you'll get infected wounds.

code/game/atoms.dm

@@ -9,6 +9,7 @@
 	var/last_bumped = 0
 	var/pass_flags = 0
 	var/throwpass = 0
+	var/germ_level = 0 // The higher the germ level, the more germ on the atom.
 
 	///Chemistry.
 	var/datum/reagents/reagents = null
@@ -121,7 +122,7 @@
  * Recursevly searches all atom contens (including contents contents and so on).
  *
  * ARGS: path - search atom contents for atoms of this type
- *       list/filter_path - if set, contents of atoms not of types in this list are excluded from search.
+ *	   list/filter_path - if set, contents of atoms not of types in this list are excluded from search.
  *
  * RETURNS: list of found atoms
  */
@@ -419,8 +420,8 @@ its easier to just keep the beam vertical.
 		A.fingerprints = list()
 	if(!istype(A.fingerprintshidden,/list))
 		A.fingerprintshidden = list()
-	A.fingerprints |= fingerprints            //detective
-	A.fingerprintshidden |= fingerprintshidden    //admin
+	A.fingerprints |= fingerprints			//detective
+	A.fingerprintshidden |= fingerprintshidden	//admin
 	A.fingerprintslast = fingerprintslast
 
 
@@ -555,6 +556,7 @@ its easier to just keep the beam vertical.
 
 /atom/proc/clean_blood()
 	clean_prints()
+	src.germ_level = 0
 	if(istype(blood_DNA, /list))
 		del(blood_DNA)
 		return 1

code/game/objects/items.dm

@@ -221,7 +221,7 @@
 	msg_admin_attack("ATTACK: [user.name] ([user.ckey]) attacked [M.name] ([M.ckey]) with [src.name] (INTENT: [uppertext(user.a_intent)]) (DAMTYE: [uppertext(src.damtype)])") //BS12 EDIT ALG
 
 
-	//spawn(1800)            // this wont work right
+	//spawn(1800)			// this wont work right
 	//	M.lastattacker = null
 	/////////////////////////
 
@@ -624,7 +624,7 @@
 		user << "\red You're going to need to remove that mask/helmet/glasses first."
 		return
 
-	if(istype(M, /mob/living/carbon/alien) || istype(M, /mob/living/carbon/metroid))//Aliens don't have eyes./N     Metroids also don't have eyes!
+	if(istype(M, /mob/living/carbon/alien) || istype(M, /mob/living/carbon/metroid))//Aliens don't have eyes./N	 Metroids also don't have eyes!
 		user << "\red You cannot locate any eyes on this creature!"
 		return
 

code/game/objects/items/devices/scanners.dm

@@ -138,6 +138,9 @@ MASS SPECTROMETER
 			if(e.status & ORGAN_BROKEN)
 				if(((e.name == "l_arm") || (e.name == "r_arm") || (e.name == "l_leg") || (e.name == "r_leg")) && (!(e.status & ORGAN_SPLINTED)))
 					user << "\red Unsecured fracture in subject [limb]. Splinting recommended for transport."
+			if(e.is_infected())
+				user << "\red Infected wound detected in subject [limb]. Disinfection recommended."
+				
 		for(var/name in H.organs_by_name)
 			var/datum/organ/external/e = H.organs_by_name[name]
 			if(e.status & ORGAN_BROKEN)