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code/modules/mob/living/silicon/pai/personality.dm

@@ -51,7 +51,7 @@
 	if (isnull(version) || version != 1)
 		fdel(path)
 		if (!silent)
-			alert(user, "Your savefile was incompatible with this version and was deleted.")
+			tgui_alert(user, "Your savefile was incompatible with this version and was deleted.")
 		return 0
 
 	F["name"] >> src.name

code/modules/mob/living/silicon/pai/software.dm

@@ -222,7 +222,7 @@
 					pda.silent = !pda.silent
 				else if(href_list["target"])
 					if(silent)
-						return alert("Communications circuits remain uninitialized.")
+						return tgui_alert(src, "Communications circuits remain uninitialized.")
 
 					var/target = locate(href_list["target"])
 					pda.create_message(src, target)