Merge pull request #11769 from phil235/FixMutations

Some dna fixes

code/datums/datacore.dm

@@ -225,7 +225,7 @@ var/record_id_num = 1001
 		var/datum/data/record/M = new()
 		M.fields["id"]			= id
 		M.fields["name"]		= H.real_name
-		M.fields["blood_type"]	= H.blood_type
+		M.fields["blood_type"]	= H.dna.blood_type
 		M.fields["b_dna"]		= H.dna.unique_enzymes
 		M.fields["mi_dis"]		= "None"
 		M.fields["mi_dis_d"]	= "No minor disabilities have been declared."
@@ -255,7 +255,7 @@ var/record_id_num = 1001
 		L.fields["rank"] 		= H.mind.assigned_role
 		L.fields["age"]			= H.age
 		L.fields["sex"]			= H.gender
-		L.fields["blood_type"]	= H.blood_type
+		L.fields["blood_type"]	= H.dna.blood_type
 		L.fields["b_dna"]		= H.dna.unique_enzymes
 		L.fields["enzymes"]		= H.dna.struc_enzymes
 		L.fields["identity"]	= H.dna.uni_identity

code/datums/mutations.dm

@@ -49,21 +49,16 @@
 		. = on_losing(owner)
 
 /datum/mutation/human/proc/on_acquiring(mob/living/carbon/human/owner)
-	if(!owner || (src in owner.dna.mutations))
+	if(!owner || !istype(owner) || (src in owner.dna.mutations))
 		return 1
 	owner.dna.mutations.Add(src)
-	gain_indication(owner)
 	owner << text_gain_indication
+	if(visual_indicators.len)
+		owner.update_mutation_overlays()
+
+/datum/mutation/human/proc/get_visual_indicator(mob/living/carbon/human/owner)
+	return
 
-/datum/mutation/human/proc/gain_indication(mob/living/carbon/human/owner)
-	owner.overlays.Add(visual_indicators)
-/*
-	var/list/result_overlays = list()
-	var/list/limbs = owner_get_limbs(NON_MECHANICAL|NON_AMPUTATED)   //I dunno how its done by RR but i assume something like this, proc that returns the list of limbs based on what types of limbs to return in argument
-	for(var/obj/limb/L in limbs)
-		result_overlays[L.identificator] = visual_indicators[L.identificator]  //visual_indicators is where overlays icons are stored, they are all created on new of each mutation, i assume you will change it to linked list for easyness, but for now its just a list
-	return owner.redraw_overlays(result_overlays, MUTATION_LAYER)    //Currently mutations draw the overlays themselves but i assume if dismemberment will be overriding lots of shit like maybe clothes or something else mutations will just pass the shit to redraw proc
-*/
 /datum/mutation/human/proc/lose_indication(mob/living/carbon/human/owner)
 	owner.overlays.Remove(visual_indicators)
 
@@ -80,9 +75,10 @@
 	return
 
 /datum/mutation/human/proc/on_losing(mob/living/carbon/human/owner)
-	if(owner && (owner.dna.mutations.Remove(src)))
-		lose_indication(owner)
+	if(owner && istype(owner) && (owner.dna.mutations.Remove(src)))
 		owner << text_lose_indication
+		if(visual_indicators.len)
+			owner.update_mutation_overlays()
 		return 0
 	return 1
 
@@ -107,16 +103,17 @@
 	visual_indicators |= image("icon"='icons/effects/genetics.dmi', "icon_state"="hulk_m_s", "layer"=-MUTATIONS_LAYER)
 
 /datum/mutation/human/hulk/on_acquiring(mob/living/carbon/human/owner)
-	if(..())	return
+	if(..())
+		return
 	var/status = CANSTUN | CANWEAKEN | CANPARALYSE | CANPUSH
 	owner.status_flags &= ~status
 
 /datum/mutation/human/hulk/on_attack_hand(mob/living/carbon/human/owner, atom/target)
 	return target.attack_hulk(owner)
 
-/datum/mutation/human/hulk/gain_indication(mob/living/carbon/human/owner)
+/datum/mutation/human/hulk/get_visual_indicator(mob/living/carbon/human/owner)
 	var/g = (owner.gender == FEMALE) ? 1 : 2
-	owner.overlays += visual_indicators[g]
+	return visual_indicators[g]
 
 /datum/mutation/human/hulk/on_life(mob/living/carbon/human/owner)
 	if(owner.health < 25)
@@ -147,6 +144,9 @@
 	..()
 	visual_indicators |= image("icon"='icons/effects/genetics.dmi', "icon_state"="telekinesishead_s", "layer"=-MUTATIONS_LAYER)
 
+/datum/mutation/human/telekinesis/get_visual_indicator(mob/living/carbon/human/owner)
+	return visual_indicators[1]
+
 /datum/mutation/human/telekinesis/on_ranged_attack(mob/living/carbon/human/owner, atom/target)
 	target.attack_tk(owner)
 
@@ -162,6 +162,9 @@
 	..()
 	visual_indicators |= image("icon"='icons/effects/genetics.dmi', "icon_state"="fire_s", "layer"=-MUTATIONS_LAYER)
 
+/datum/mutation/human/cold_resistance/get_visual_indicator(mob/living/carbon/human/owner)
+	return visual_indicators[1]
+
 /datum/mutation/human/cold_resistance/on_life(mob/living/carbon/human/owner)
 	if(owner.getFireLoss())
 		if(prob(1))
@@ -176,7 +179,8 @@
 	text_gain_indication = "<span class='notice'>The walls suddenly disappear!</span>"
 
 /datum/mutation/human/x_ray/on_acquiring(mob/living/carbon/human/owner)
-	if(..())	return
+	if(..())
+		return
 	on_life(owner)
 
 /datum/mutation/human/x_ray/on_life(mob/living/carbon/human/owner)
@@ -335,19 +339,13 @@
 	quality = NEGATIVE
 
 /datum/mutation/human/race/on_acquiring(mob/living/carbon/human/owner)
-	if(..())	return
-	. = owner.monkeyize(TR_KEEPITEMS | TR_KEEPIMPLANTS | TR_KEEPORGANS | TR_KEEPDAMAGE | TR_KEEPVIRUS | TR_KEEPSE)
-
-/datum/mutation/human/race/gain_indication(mob/living/carbon/human/owner)
-	return
-
-/datum/mutation/human/race/lose_indication(mob/living/carbon/monkey/owner)
-	return
-
-/datum/mutation/human/race/on_losing(mob/living/carbon/monkey/owner)
 	if(..())
 		return
-	. = owner.humanize(TR_KEEPITEMS | TR_KEEPIMPLANTS | TR_KEEPORGANS | TR_KEEPDAMAGE | TR_KEEPVIRUS | TR_KEEPSE)
+	. = owner.monkeyize(TR_KEEPITEMS | TR_KEEPIMPLANTS | TR_KEEPORGANS | TR_KEEPDAMAGE | TR_KEEPVIRUS | TR_KEEPSE)
+
+/datum/mutation/human/race/on_losing(mob/living/carbon/monkey/owner)
+	if(owner && istype(owner) && (owner.dna.mutations.Remove(src)))
+		. = owner.humanize(TR_KEEPITEMS | TR_KEEPIMPLANTS | TR_KEEPORGANS | TR_KEEPDAMAGE | TR_KEEPVIRUS | TR_KEEPSE)
 
 
 /datum/mutation/human/stealth
@@ -597,3 +595,20 @@
 	if(owner.a_intent == "harm")
 		owner.LaserEyes(target)
 
+
+/mob/living/carbon/human/proc/update_mutation_overlays()
+	remove_overlay(MUTATIONS_LAYER)
+	var/image/standing
+
+	for(var/datum/mutation/human/CM in dna.mutations)
+		if(CM.visual_indicators.len)
+			var/image/V = CM.get_visual_indicator(src)
+			if(!standing)
+				standing = V
+			else
+				standing.overlays += V
+
+	if(standing)
+		overlays_standing[MUTATIONS_LAYER] = standing
+	apply_overlay(MUTATIONS_LAYER)
+

code/datums/spells/genetic.dm

@@ -18,6 +18,8 @@
 /obj/effect/proc_holder/spell/targeted/genetic/cast(list/targets)
 	playMagSound()
 	for(var/mob/living/carbon/target in targets)
+		if(!target.dna)
+			continue
 		for(var/A in mutations)
 			target.dna.add_mutation(A)
 		target.disabilities |= disabilities

code/game/dna.dm

@@ -560,7 +560,7 @@
 	if(connected && connected.is_operational())
 		if(connected.occupant)	//set occupant_status message
 			viable_occupant = connected.occupant
-			if(check_dna_integrity(viable_occupant) && (!(NOCLONE in viable_occupant.mutations) || (connected.scan_level == 3)))	//occupent is viable for dna modification
+			if(check_dna_integrity(viable_occupant) && (!(viable_occupant.disabilities & NOCLONE) || (connected.scan_level == 3)))	//occupent is viable for dna modification
 				occupant_status += "[viable_occupant.name] => "
 				switch(viable_occupant.stat)
 					if(CONSCIOUS)	occupant_status += "<span class='good'>Conscious</span>"
@@ -755,7 +755,7 @@
 	var/mob/living/carbon/viable_occupant
 	if(connected)
 		viable_occupant = connected.occupant
-		if(!istype(viable_occupant) || !viable_occupant.dna || (NOCLONE in viable_occupant.mutations))
+		if(!istype(viable_occupant) || !viable_occupant.dna || (viable_occupant.disabilities & NOCLONE))
 			viable_occupant = null
 
 	//Basic Tasks///////////////////////////////////////////

code/game/machinery/PDApainter.dm

@@ -46,13 +46,13 @@
 			user << "<span class='warning'>There is already a PDA inside!</span>"
 			return
 		else
-			var/obj/item/device/pda/P = usr.get_active_hand()
+			var/obj/item/device/pda/P = user.get_active_hand()
 			if(istype(P))
 				if(!user.drop_item())
 					return
 				storedpda = P
 				P.loc = src
-				P.add_fingerprint(usr)
+				P.add_fingerprint(user)
 				update_icon()
 
 

code/game/machinery/computer/Operating.dm

@@ -49,7 +49,7 @@
 /obj/machinery/computer/operating/proc/get_patient_info()
 	var/dat = {"
 				<div class='statusLabel'>Patient:</div> [patient.stat ? "<span class='bad'>Non-Responsive</span>" : "<span class='good'>Stable</span>"]<BR>
-				<div class='statusLabel'>Blood Type:</div> [patient.blood_type]
+				<div class='statusLabel'>Blood Type:</div> [patient.dna.blood_type]
 
 				<BR>
 				<div class='line'><div class='statusLabel'>Health:</div><div class='progressBar'><div style='width: [max(patient.health, 0)]%;' class='progressFill good'></div></div><div class='statusValue'>[patient.health]%</div></div>

code/game/machinery/computer/cloning.dm

@@ -359,7 +359,7 @@
 	if (subject.suiciding == 1)
 		scantemp = "<font class='bad'>Subject's brain is not responding to scanning stimuli.</font>"
 		return
-	if ((NOCLONE in subject.mutations) && (src.scanner.scan_level < 2))
+	if ((subject.disabilities & NOCLONE) && (src.scanner.scan_level < 2))
 		scantemp = "<font class='bad'>Subject no longer contains the fundamental materials required to create a living clone.</font>"
 		return
 	if ((!subject.ckey) || (!subject.client))

code/game/machinery/iv_drip.dm

@@ -127,7 +127,7 @@
 			if(!istype(T)) return
 			if(!T.dna)
 				return
-			if(NOCLONE in T.mutations)
+			if(T.disabilities & NOCLONE)
 				return
 
 			if(NOBLOOD in T.dna.species.specflags)

code/game/objects/items/weapons/defib.dm

@@ -431,7 +431,7 @@
 
 						var/failed = null
 
-						if (H.suiciding || (NOCLONE in H.mutations))
+						if (H.suiciding || (H.disabilities & NOCLONE))
 							failed = "<span class='warning'>[defib] buzzes: Resuscitation failed - Recovery of patient impossible. Further attempts futile.</span>"
 						else if ((tplus > tlimit) || !H.getorgan(/obj/item/organ/internal/heart))
 							failed = "<span class='warning'>[defib] buzzes: Resuscitation failed - Heart tissue damage beyond point of no return. Further attempts futile.</span>"

code/game/objects/items/weapons/dna_injector.dm

@@ -17,7 +17,7 @@
 
 
 /obj/item/weapon/dnainjector/proc/inject(mob/living/carbon/M, mob/user)
-	if(check_dna_integrity(M) && !(NOCLONE in M.mutations))
+	if(check_dna_integrity(M) && !(M.disabilities & NOCLONE))
 		if(M.stat == DEAD)	//prevents dead people from having their DNA changed
 			user << "<span class='notice'>You can't modify [M]'s DNA while \he's dead.</span>"
 			return

code/game/objects/structures/ai_core.dm

@@ -113,12 +113,12 @@
 				laws.clear_zeroth_law(0)
 				for(var/templaw in M.laws)
 					laws.add_inherent_law(templaw)
-				usr << "<span class='notice'>Law module applied.</span>"
+				user << "<span class='notice'>Law module applied.</span>"
 
 			if(istype(P, /obj/item/weapon/aiModule/reset/purge))
 				laws.clear_inherent_laws()
 				laws.clear_zeroth_law(0)
-				usr << "<span class='notice'>Laws cleared applied.</span>"
+				user << "<span class='notice'>Laws cleared applied.</span>"
 
 
 			if(istype(P, /obj/item/weapon/aiModule/supplied/freeform) || istype(P, /obj/item/weapon/aiModule/core/freeformcore))
@@ -126,7 +126,7 @@
 				if(M.laws[1] == "")
 					return
 				laws.add_inherent_law(M.laws[1])
-				usr << "<span class='notice'>Added a freeform law.</span>"
+				user << "<span class='notice'>Added a freeform law.</span>"
 
 			if(istype(P, /obj/item/device/mmi))
 				var/obj/item/device/mmi/M = P
@@ -166,7 +166,7 @@
 
 				M.loc = src
 				brain = M
-				usr << "<span class='notice'>Added a brain.</span>"
+				user << "<span class='notice'>Added a brain.</span>"
 				icon_state = "3b"
 
 			if(istype(P, /obj/item/weapon/crowbar) && brain)

code/game/objects/structures/mirror.dm

@@ -154,7 +154,7 @@
 			hardset_dna(H, null, null, null, null, newrace)
 
 			if(H.dna.species.use_skintones)
-				var/new_s_tone = input(user, "What are we again?", "Race change")  as null|anything in skin_tones
+				var/new_s_tone = input(user, "Choose your skin tone:", "Race change")  as null|anything in skin_tones
 
 				if(new_s_tone)
 					H.skin_tone = new_s_tone

code/modules/admin/create_mob.dm

@@ -12,7 +12,6 @@
 	H.gender = pick(MALE, FEMALE)
 	H.real_name = random_unique_name(H.gender)
 	H.name = H.real_name
-	H.dna.generate_uni_identity(H)
 	H.underwear = random_underwear(H.gender)
 	H.skin_tone = random_skin_tone()
 	H.hair_style = random_hair_style(H.gender)

code/modules/admin/secrets.dm

@@ -221,7 +221,7 @@
 			dat += "<table cellspacing=5><tr><th>Name</th><th>DNA</th><th>Blood Type</th></tr>"
 			for(var/mob/living/carbon/human/H in mob_list)
 				if(H.dna && H.ckey)
-					dat += "<tr><td>[H]</td><td>[H.dna.unique_enzymes]</td><td>[H.blood_type]</td></tr>"
+					dat += "<tr><td>[H]</td><td>[H.dna.unique_enzymes]</td><td>[H.dna.blood_type]</td></tr>"
 			dat += "</table>"
 			usr << browse(dat, "window=DNA;size=440x410")
 		if("fingerprints")

code/modules/admin/verbs/randomverbs.dm

@@ -300,7 +300,7 @@ Traitors and the like can also be revived with the previous role mostly intact.
 		new_character.real_name = record_found.fields["name"]
 		new_character.gender = record_found.fields["sex"]
 		new_character.age = record_found.fields["age"]
-		new_character.blood_type = record_found.fields["blood_type"]
+		new_character.dna.blood_type = record_found.fields["blood_type"]
 	else
 		new_character.gender = pick(MALE,FEMALE)
 		var/datum/preferences/A = new()

code/modules/mob/interactive.dm

@@ -186,7 +186,7 @@
 	if(TRAITS & TRAIT_SMART)
 		smartness = 25
 	else if(TRAITS & TRAIT_DUMB)
-		mutations |= CLUMSY
+		disabilities |= CLUMSY
 		smartness = 75
 
 	if(TRAITS & TRAIT_MEAN)
@@ -293,7 +293,7 @@
 
 /mob/living/carbon/human/interactive/Life()
 	..()
-	if(isnotfunc()) 
+	if(isnotfunc())
 		walk(src,0)
 		return
 	if(a_intent != "disarm")

code/modules/mob/living/carbon/human/death.dm

@@ -66,5 +66,5 @@
 
 /mob/living/carbon/proc/Drain()
 	ChangeToHusk()
-	mutations |= NOCLONE
+	disabilities |= NOCLONE
 	return 1

code/modules/mob/living/carbon/human/human.dm

@@ -29,8 +29,9 @@
 		I.Insert(src)
 
 	// for spawned humans; overwritten by other code
-	ready_dna(src)
+	create_dna(src)
 	randomize_human(src)
+	ready_dna(src)
 
 	make_blood()
 

code/modules/mob/living/carbon/human/human_defines.dm

@@ -18,7 +18,6 @@
 	var/lip_color = "white"
 
 	var/age = 30		//Player's age (pure fluff)
-	var/blood_type = "A+"	//Player's bloodtype
 
 	var/underwear = "Nude"	//Which underwear the player wants
 	var/undershirt = "Nude" //Which undershirt the player wants

code/modules/mob/living/carbon/human/human_helpers.dm

@@ -56,7 +56,7 @@
 	if( head && (head.flags_inv&HIDEFACE) )
 		return if_no_face		//Likewise for hats
 	var/obj/item/organ/limb/O = get_organ("head")
-	if( (status_flags&DISFIGURED) || (O.brutestate+O.burnstate)>2 || cloneloss>50 || !real_name )	//disfigured. use id-name if possible
+	if( !O || (status_flags&DISFIGURED) || (O.brutestate+O.burnstate)>2 || cloneloss>50 || !real_name )	//disfigured. use id-name if possible
 		return if_no_face
 	return real_name
 

code/modules/mob/living/silicon/pai/software.dm

@@ -372,9 +372,9 @@
 /mob/living/silicon/pai/proc/CheckDNA(mob/living/carbon/M, mob/living/silicon/pai/P)
 	var/answer = input(M, "[P] is requesting a DNA sample from you. Will you allow it to confirm your identity?", "[P] Check DNA", "No") in list("Yes", "No")
 	if(answer == "Yes")
-		var/turf/T = get_turf(P.loc)
-		for (var/mob/v in viewers(T))
-			v.show_message("<span class='notice'>[M] presses \his thumb against [P].</span>", 3, "<span class='notice'>[P] makes a sharp clicking sound as it extracts DNA material from [M].</span>", 2)
+		M.visible_message("<span class='notice'>[M] presses \his thumb against [P].</span>",\
+						"<span class='notice'>You press your thumb against [P].</span>",\
+						"<span class='notice'>[P] makes a sharp clicking sound as it extracts DNA material from [M].</span>")
 		if(!check_dna_integrity(M))
 			P << "<b>No DNA detected</b>"
 			return

code/modules/mob/mob_defines.dm

@@ -106,9 +106,6 @@
 
 	var/radiation = 0//Carbon
 
-	var/list/mutations = list() //Carbon -- Doohl
-	//see: setup.dm for list of mutations
-
 	var/voice_name = "unidentifiable voice"
 
 	var/list/faction = list("neutral") //A list of factions that this mob is currently in, for hostile mob targetting, amongst other things

code/modules/mob/mob_helpers.dm

@@ -453,9 +453,6 @@ It's fairly easy to fix if dealing with single letters but not so much with comp
 		return 1
 	return 0
 
-/mob/proc/has_mutation(mutation)
-	return mutation in src.mutations ? 1 : 0
-
 /proc/get_both_hands(mob/living/carbon/M)
 	var/list/hands = list(M.l_hand, M.r_hand)
 	return hands

code/modules/mob/mob_transformation_simple.dm

@@ -40,7 +40,7 @@
 		M.name = src.name
 		M.real_name = src.real_name
 
-	if(check_dna_integrity(src) && istype(M, /mob/living/carbon))
+	if(check_dna_integrity(src))
 		var/mob/living/carbon/C = src
 		var/mob/living/carbon/D = M
 		D.dna = C.dna

code/modules/mob/transform_procs.dm

@@ -59,6 +59,7 @@
 		viruses = list()
 		for(var/datum/disease/D in O.viruses)
 			D.affected_mob = O
+			D.holder = O
 
 	//keep damage?
 	if (tr_flags & TR_KEEPDAMAGE)
@@ -169,7 +170,6 @@
 	else
 		hardset_dna(O, null, null, null, null, dna.species.type)
 
-	dna = null
 	if(newname) //if there's a name as an argument, always take that one over the current name
 		O.real_name = newname
 	else
@@ -189,6 +189,7 @@
 		viruses = list()
 		for(var/datum/disease/D in O.viruses)
 			D.affected_mob = O
+			D.holder = O
 		O.med_hud_set_status()
 
 	//keep damage?

code/modules/ninja/ninja_event.dm

@@ -167,7 +167,6 @@ Contents:
 
 /proc/create_space_ninja(spawn_loc)
 	var/mob/living/carbon/human/new_ninja = new(spawn_loc)
-	if(prob(50)) new_ninja.gender = "female"
 	var/datum/preferences/A = new()//Randomize appearance for the ninja.
 	A.real_name = "[pick(ninja_titles)] [pick(ninja_names)]"
 	A.copy_to(new_ninja)

code/modules/power/lighting.dm

@@ -333,7 +333,6 @@
 								"<span class='danger'>You hit the light, and it smashes!</span>", \
 								 "<span class='italics'>You hear a tinkle of breaking glass.</span>")
 			if(on && (W.flags & CONDUCT))
-				//if(!user.mutations & COLD_RESISTANCE)
 				if (prob(12))
 					electrocute_mob(user, get_area(src), src, 0.3)
 			broken()
@@ -369,7 +368,6 @@
 			var/datum/effect/effect/system/spark_spread/s = new /datum/effect/effect/system/spark_spread
 			s.set_up(3, 1, src)
 			s.start()
-			//if(!user.mutations & COLD_RESISTANCE)
 			if (prob(75))
 				electrocute_mob(user, get_area(src), src, rand(0.7,1.0))
 

code/modules/reagents/Chemistry-Reagents/Medicine-Reagents.dm

@@ -682,7 +682,7 @@
 			M.visible_message("<span class='warning'>[M]'s body convulses a bit, and then falls still once more.</span>")
 			return
 		M.visible_message("<span class='warning'>[M]'s body convulses a bit.</span>")
-		if(!M.suiciding && !(NOCLONE in M.mutations))
+		if(!M.suiciding && !(M.disabilities & NOCLONE))
 			if(!M)
 				return
 			if(M.notify_ghost_cloning())

code/modules/reagents/Chemistry-Reagents/Toxin-Reagents.dm

@@ -123,7 +123,7 @@
 	toxpwr = 0
 
 /datum/reagent/toxin/minttoxin/on_mob_life(mob/living/M)
-	if (FAT in M.mutations)
+	if (M.disabilities & FAT)
 		M.gib()
 	..()
 	return

code/modules/reagents/reagent_containers/syringes.dm

@@ -79,7 +79,7 @@
 					if(!check_dna_integrity(T))
 						user << "<span class='warning'>You are unable to locate any blood!</span>"
 						return
-					if(NOCLONE in T.mutations)	//target done been eat, no more blood in him
+					if(T.disabilities & NOCLONE)	//target done been eat, no more blood in him
 						user << "<span class='warning'>You are unable to locate any blood!</span>"
 						return
 					if(target != user)